update with samtools,bedtools,ucsc-bedgraphtobigwig#2
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update with samtools,bedtools,ucsc-bedgraphtobigwig#2
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Create container for Rmarkdown, data analysys with dplyr and tydiverse to create Latex and pdf. All in conda-forge or bioconda. Many thanks!
Create container for Rmarkdown and Latex
…e91a335cb7482fc7d7bffc36a619fffa76d9. **Hash**: mulled-v2-ca0c8ce36102797c1df5c5b53bd2a8710546345c:aa3fe91a335cb7482fc7d7bffc36a619fffa76d9 **Packages**: - tar=1.34 - meryl=1.3 - smudgeplot=0.2.5 - kmer-jellyfish=2.3.0 Base Image:quay.io/bioconda/base-glibc-busybox-bash:latest **For** : - smudgeplot.xml Generated with Planemo.
…94c85b2f194e301c71cdda1c002a754e8cc1. **Hash**: mulled-v2-66534bcbb7031a148b13e2ad42583020b9cd25c4:7e6194c85b2f194e301c71cdda1c002a754e8cc1 **Packages**: - samtools=1.17 - minimap2=2.26 Base Image:quay.io/bioconda/base-glibc-busybox-bash:latest **For** : - minimap2.xml Generated with Planemo.
…v2-ca0c8ce36102797c1df5c5b53bd2a8710546345c-aa3fe91a335cb7482fc7d7bffc36a619fffa76d9 Add container mulled-v2-ca0c8ce36102797c1df5c5b53bd2a8710546345c:aa3fe91a335cb7482fc7d7bffc36a619fffa76d9.
…v2-66534bcbb7031a148b13e2ad42583020b9cd25c4-7e6194c85b2f194e301c71cdda1c002a754e8cc1 Add container mulled-v2-66534bcbb7031a148b13e2ad42583020b9cd25c4:7e6194c85b2f194e301c71cdda1c002a754e8cc1.
…14.26.0 Add ncbi-datasets-cli:14.26.0-0
…dd2b170df8a59304bacc3bacbfd7758d71dc. **Hash**: mulled-v2-0c37e2cabbea75a32163b1262c3dc18ab9d7600e:9646dd2b170df8a59304bacc3bacbfd7758d71dc **Packages**: - abyss=2.3.6 - bwa=0.7.17 Base Image:quay.io/bioconda/base-glibc-debian-bash:latest **For** : - abyss-pe.xml Generated with Planemo.
…v2-0c37e2cabbea75a32163b1262c3dc18ab9d7600e-9646dd2b170df8a59304bacc3bacbfd7758d71dc Add container mulled-v2-0c37e2cabbea75a32163b1262c3dc18ab9d7600e:9646dd2b170df8a59304bacc3bacbfd7758d71dc.
Requesting mulled container with bbmap=39.01 seqkit=2.4.0
…565f2a1e0c5b15dc527e62dce057b09c250b. **Hash**: mulled-v2-36ba0d5590c58fd8485272d70f458149cdb6dd94:1e93565f2a1e0c5b15dc527e62dce057b09c250b **Packages**: - hifiasm=0.19.5 - yak=0.1 Base Image:quay.io/bioconda/base-glibc-busybox-bash:latest **For** : - hifiasm.xml Generated with Planemo.
Requesting mulled container with bbmap=39.01 seqkit=2.4.0
…v2-36ba0d5590c58fd8485272d70f458149cdb6dd94-1e93565f2a1e0c5b15dc527e62dce057b09c250b Add container mulled-v2-36ba0d5590c58fd8485272d70f458149cdb6dd94:1e93565f2a1e0c5b15dc527e62dce057b09c250b.
Add mulled container for pyrodigal + pigz
Added bedtools=2.31.0,samtools=1.17,coreutils=9.3,gawk=5.1.0
Update hash.tsv
…afb38f763d3b23f9e22f3ebf8a38d6de3c05. **Hash**: mulled-v2-50663d6e00edeea59fd06d601e1c7fc4ead2e51e:60f9afb38f763d3b23f9e22f3ebf8a38d6de3c05 **Packages**: - scikit-learn=1.0.2 - cnvkit=0.9.10 Base Image:quay.io/bioconda/base-glibc-busybox-bash:latest **For** : - reference.xml - access.xml - autobin.xml - heatmap.xml - target.xml - diagram.xml - segment.xml - scatter.xml - batch.xml - call.xml - antitarget.xml - fix.xml Generated with Planemo.
…v2-50663d6e00edeea59fd06d601e1c7fc4ead2e51e-60f9afb38f763d3b23f9e22f3ebf8a38d6de3c05 Add container mulled-v2-50663d6e00edeea59fd06d601e1c7fc4ead2e51e:60f9afb38f763d3b23f9e22f3ebf8a38d6de3c05.
This reverts commit 4ff942e.
Update hash.tsv
Requesting bismark with pigz and seqkit
Requesting mulled container with bbmap=39.01 and samtools=1.17
Add datavzrd and yte template engine containers.
polars 0.18.15
Signed-off-by: Marcel Ribeiro-Dantas <mribeirodantas@seqera.io>
…vcftools Add vcftools and htslib
add mulled container with r libraries for plots
pyopenms=2.9.1,sirius-csifingerid=5.8.2
perl and cutadapt
add old bedtools version
…tools bedtools=2.27.0 samtools=1.2
bowtie2=2.5.1,samtools=1.17
…c4e8e5a35bcff461c675637246ec429800cb. **Hash**: mulled-v2-d3567f5619929c65634ae5e58d309a2d5e1103f3:be66c4e8e5a35bcff461c675637246ec429800cb **Packages**: - perl-math-cdf=0.1 - grep=3.11 - ensembl-vep=110.1 Base Image:quay.io/bioconda/base-glibc-busybox-bash:latest **For** : - ensembl_vep.xml Generated with Planemo.
…v2-d3567f5619929c65634ae5e58d309a2d5e1103f3-be66c4e8e5a35bcff461c675637246ec429800cb Add container mulled-v2-d3567f5619929c65634ae5e58d309a2d5e1103f3:be66c4e8e5a35bcff461c675637246ec429800cb.
python=3.9,pigz=2.6,sed=4.8
preseq=3.2.0,samtools=1.17,csvtk=0.25.0
Update hash.tsv with preseq/samtools/csvtk
bedtools=2.31.0,samtools=1.17,ucsc-bedgraphtobigwig=377
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bedtools=2.31.0,samtools=1.17,ucsc-bedgraphtobigwig=377